Recent Refereed Journal Publications:

G.R. Cramer, S.C. Van Sluyter, Delphine Vincent, Daniel W. Hopper, David R. Quilici, Rebekah J. Woolsey, John C. Cushman, Iniga George, Paul A. Haynes (2017). Early and Late Responses of Grapevine (Vitis vinifera L.) to Water Deficit: A Proteomics Perspective. Acta Hortic. 1157, 263-272
DOI: 10.17660/ActaHortic.2017.1157.37

Hochberg, U., Degu, A., Rachmilevitch, S., Cramer, G.R. and Fait, A. (2017). Water deficit effects on the molecular processes, physiology and quality of grapevine. Acta Hortic. 1157, 239-254
DOI: 10.17660/ActaHortic.2017.1157.35

Ghan, R., J. Petereit, R.L. Tillet, K.A. Schlauch, D. Toubiana, A. Fait, and G.R. Cramer. (2017) The common transcriptional subnetworks of the grape berry skin in the late stages of ripening. BMC Plant Biology 17:94

Anne-Françoise ADAM-BLONDON, Michael ALAUX, Cyril POMMIER, Dario Cantu, Zong-Ming (Max) Cheng, Grant R. Cramer, Christopher DAVIES, Serge Delrot, Laurent Deluc, Gabriele Di Gaspero, Jérôme Grimplet, Anne Fennell, Jason Londo, Paul KERSEY, Fulvio MATTIVI, Sushma Naithani, Pascal NEVEU, Macha Nikolski, Mario Pezzotti, Bruce I Reisch, Reinhard Toepfer, Melane VIVIER, Doreen WARE, and Hadi Quesneville. (2016). Towards an open grapevine information system. Horticultural Research 3:16056 DOI:10.1038/hortres.2016.56

Chen-Shan Chin, Paul Peluso, Fritz Sedlazeck, Maria Nattestad, Gregory Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz, Grant R. Cramer, Massimo Delledonne, Chongyuan Luo, Joseph Ecker, Dario Cantu, David Rank, Michael C Schatz. (2016) Phased diploid genome assembly with single molecule real-time sequencing. Nature Methods 13:1050-1054.

Rattanakon, S., R., I. George, P.A. Haynes, and G.R. Cramer. (2016) Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid. Horticulture Research 3:16029, doi:10.1038/hortres.2016.29

Rattanakon, S., R. Ghan, G.A. Gambetta, L.G. Deluc, K.A. Schlauch and G.R. Cramer. (2016) Abscisic acid transcriptomic signaling varies with grapevine organ. BMC Plant Biology 16:72

Asfaw Degu, Biruk  Ayenew, Uri  Hochberg, Grant R Cramer, Aaron Fait. (2016) Polyphenolic responses of grapevine berries to light, temperature, oxidative stress, abscisic acid and jasmonic acid show specific developmental-dependent degrees of metabolic resilience to perturbation. Food Chemistry 212: 828-836.

Hopper, D.W., R., Ghan, K.A. Schlauch and G.R. Cramer. (2016). Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance. BMC Plant Biology 16:118.

Yuanchun Ma, Jiaoyang Wang, Yan Zhong, Grant R. Cramer, Zong-Ming (Max) Cheng. (2015) Genome-wide analysis of the CPA super family genes in grapevine (Vitis vinifera L.). Plant Omics 8: 300-311.

Ghan, R., S.C. Van Sluyter, U. Hochberg, A.Degu, D.W. Hopper, R.L. Tillet, K. Schlauch, P.A. Haynes, A. Fait, and G.R. Cramer. (2015). Five Omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. BMC Genomics 16:946  doi:10.1186/s12864-015-2115-y

Simone D Castellarin, Gregory A Gambetta, Hiroshi Wada, Mark N Krasnow, Grant R Cramer, Enrico Peterlunger, Kenneth A Shackel, and Mark A Matthews (2016). Characterization of major events during softening in grape: turgor, sugar accumulation, ABA metabolism, color development, and their relationship with growth. Journal of Experimental Botany 67: 709-722. 10.1093/jxb/erv483

Cramer, G.R., S.C. Van Sluyter, D. Vincent, D.W. Hopper, D.R. Quilici, R.J. Woolsey, J.C. Cushman, I. George, and P.A. Haynes. (2016) Early and Late Responses of Grapevine (Vitis vinifera L.) to Water Deficit: A  Proteomics Perspective. Acta Horticulturae (Additional Files 1, 2, and 3)

Cramer, G.R., S. C. Van Sluyter, D.W. Hopper, D. Pascovici, T. Keighley, P.A. Haynes. (2013) Proteomic analysis indicates massive changes in metabolism prior to the inhibition of growth and photosynthesis of grapevine (Vitis vinifera L.) in response to water deficit. BMC Plant Biology 13:49

Wang, L., S. Li, J. Wang, G. Cramer, Z. Dai, W. Duan, H. Xu, B. Wu and P. Fan. (2012) Transcriptomic analysis during heat stress and the following recovery of grapevine (Vitis vinifera L.) leaves. BMC Plant Biology 12:174

Tillet, R.L., Ergül, A., Albion, R.L., Schlauch, K.A., Cramer, G.R., and Cushman, J.C. (2011). Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets. BMC Plant Biology 11:86

Tillet, R.L., M.D. Wheatley, Elizabeth A.R. Tattersall, K.A. Schlauch, G.R. Cramer and J.C. Cushman. (2011) The Vitis vinifera C-repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape. Plant Biotechnology Journal 10: 105-124 (DOI: 10.1111/j.1467-7652.2011.00648.x)

Cramer, G.R., Urano, K., Delrot, S., Pezzotti, M., Shinozaki, K. (2011). Abiotic stress in plants: a systems biology perspective. BMC Plant Biology 11:163

Vega A, Gutierrez R, Peña-Neira A, Cramer GR and Arce-Johnson P. (2011) Compatible viral infections affect berry ripening decreasing sugar accumulation and flavonoid biosynthesis in Vitis vinifera. Plant Molecular Biology 77:261-274. DOI: 10.1007/s11103-011-9807-8

Deluc, L.G., A. Decendit, Y. Papastomoulis, J.-M. Mérillon, J.C. Cushman and G.R. Cramer. (2011) Water deficit increases stilbene metabolism in Cabernet Sauvignon berries. JAFC 59:289-297

G.R. Cramer. (2010) Abiotic stress & plant responses - from the whole vine to the genes. Aust J Grape Wine Res 16:86-93

Sweetman C, Deluc LG, Cramer GR, Ford CM, Soole KL. (2009) Regulation of malate metabolism in grape berry and other developing fruits. Phytochemistry 70: 1329-1344

J. Grimplet, G.R. Cramer, J.A. Dickerson, K. Mathiason, J. Van Hemert, and A.Y. Fennell. (2009) VitisNet: "Omics" integration through grapevine molecular networks. PLoSE ONE 4(12): e8365

M.D. Wheatley, E.A.R. Tattersall, R.L. Tillet and G.R. Cramer. (2009) An expanded clay pebble, continuous recirculating drip system for viable long-term hydroponic growth of grapevine (Vitis vinifera L.). Am J Enol Vitic 60: 542-549

J. Grimplet, M.D. Wheatley, H. Ben Jouira, L.G. Deluc, G. R. Cramer and J.C. Cushman. (2009) Proteomic and selected metabolite analysis of grape berry tissues under well watered and water-deficit stress conditions. Proteomics 9:2503-2528

Deluc, L.G., J. Grimplet, M.D. Wheatley, A. Decendit, K. Schlauch, D. Quilici, J.-M. Mérillon, J.C. Cushman and G.R. Cramer. (2009) Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay. BMC Genomics 10:212

Xiao, H., E.A.R. Tattersall, M.K. Siddiqua, G.R. Cramer and A. Nassuth. 2008. CBF4 is a unique member of the CBF transcription factor family of Vitis vinifera and Vitis riparia. Plant Cell and Environment 31:1-8

Deluc, L.G., J. Grimplet, M.D. Wheatley, R.L. Tillet, D. Quilici, C. Osborne, K.A. Schlauch, D.A. Schooley, J.C. Cushman, and G.R. Cramer. 2007. Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC Genomics, 8:429

Grimplet, J., L.G. Deluc, R.L. Tillett, M.D. Wheatley, K.A. Schlauch, G.R. Cramer and J.C. Cushman. 2007. Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics 8:187

Tattersall, E.A.R., J. Grimplet, L. DeLuc, M.D. Wheatley, D. Vincent, C. Osborne, A. Ergül, E. Lomen, R.R. Blank, K.A. Schlauch, J.C. Cushman, G.R. Cramer. 2007. Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling as compared to osmotic and salinity stress. Functional and Integrative Genomics 7:317-333

Vincent, D., Ali Ergül, Marlene C. Bohlman, Elizabeth A. R. Tattersall, Richard L. Tillett, Matthew D. Wheatley, Rebekah Woolsey, David R. Quilici, Johann Joets, Karen Schlauch, David A. Schooley, John C. Cushman and Grant R. Cramer. 2007. Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity. Journal of Experimental Botany 58: 1873-1892

Cramer, G.R., A. Ergül, J. Grimplet, R.L. Tillett, E.A.R. Tattersall, M.C. Bohlman, D. Vincent, J. Sonderegger, J. Evans, C. Osborne, D. Quilici, K.A. Schlauch, D.A. Schooley and J.C. Cushman. 2007. Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Functional and Integrative Genomics 7:111-134

Espinoza C, A. Vega, C. Medina, K. Schlauch, G. Cramer, and P. Arce-Johnson. 2007. Analysis of gene expression associated with compatible viral diseases in grapevine cultivars. Functional and Integrative Genomics 7:95-110

D.C. Bowman, D. Devitt, and G.R. Cramer. 2006. Effect of N status on salinity tolerance of tall fescue turf. J. Plant Nutr. 29:1491-1497

D.C. Bowman, D. Devitt, and G.R. Cramer. 2006. Effect of salinity and N status on N uptake by tall fescue turf. J. Plant Nutr. 29:1481-1490

Vincent, D., M. Wheatley and G.R. Cramer. 2006. Optimization of protein extraction for mature grape berry clusters. Electrophoresis 27:1853-1865

Tattersall, E.A.R., A. Ergul, F. Al-Kayal, L. DeLuc, J.C. Cushman, and G.R. Cramer. 2005. A comparison of methods for isolating RNA from leaves of grapevine (Vitis vinifera). Am J Enol Vitic 56:400-406. Note there is a published error in the TRIS-LiCl method. It should read 10 mM EDTA not 300 mM EDTA. See TRIS-LiCl mRNA extraction for Dummies for corrections.

Cramer, G.R., J.C. Cushman, D.A. Schooley, D. Quilici, D. Vincent, M.C. Bohlman, A. Ergul, E.A.R. Tattersall, R. Tillett, J. Evans, R. Delacruz, K. Schlauch, P. Mendes. 2005. Progress in bioinformatics – the challenge of integrating transcriptomic, proteomic and metabolomic information. Acta Hort 689: 417-425

F.G. da Silva, A. Iandolino, H. Lim, J.-M. Baek, A. Leslie, J. Xu, D.R. Cook, M. Bohlmann, F. Al-Kayal, R. Figueroa, M.A. Cushman, E.K. Kabuloglu, E.A.R. Tattersall, A. Ergul, G.R. Cramer, J.C. Cushman. 2005. Characterizing the grape transcriptome: analysis of ESTs from multiple Vitis species. Plant Physiol 139:574-597

Evans, J., E.A.R. Tattersall, W. Johnson, and G.R. Cramer. 2005.Towards wine grape (Vitis vinifera) vineyard establishment in Northern Nevada: varietal studies in the dry desert climate. NAES publication #51055382. University of Nevada, Reno.

Cramer, G.R. 2003. Differential effects of salinity on leaf elongation kinetics of three grass species. Plant Soil 253:233-244

Cramer, G.R. 2002. Response of ABA mutants of Arabidopsis to salinity. Funct Plant Biol 29:561-567

Cramer, G.R., and S. Quarrie. 2002. Abscisic acid is correlated with the leaf growth inhibition of four genotypes of maize differing in their response to salinity. Funct Plant Biol 29:111-115 Corrected Figure 2

Benesch, J.A., M.S. Gustin, G.R. Cramer and T.M. Cahill. 2002. Investigation of effects of trifluoroacetate on vernal pool ecosystems. Environ Toxic Chem 21:640-647

Gibeaut, D.M., G.R. Cramer, and J.R. Seemann. 2001. Growth, cell walls, and UDP-Glc dehydrogenase activity of Arabidopsis thaliana grown in elevated carbon dioxide. J Plant Physiol 158:569-576

Munns, R. J. Guo, J.B. Passioura, and G.R. Cramer. 2000. Leaf water status contols day-time but not daily rates of leaf expansion in salt-treated barley. Aust J Plant Physiol 27:949-957

Munns, R. J.B. Passioura, J. Guo, O. Chazen and G.R. Cramer. 2000. Cell turgor and leaf expansion: importance of timescale. J ExpBot 51: 1495-1504

Cramer, G.R, C.L. Schmidt, and C. Bidhart. 2001 Analysis of cell wall hardening and cell wall enzymes of salt-stressed maize (Zea mays) leaves. Aust JPlant Physiol 28:101-109

Cramer, G.R., M. Krishnan, and S. Abrams. 1998. Kinetics of maize leaf elongation. IV. Effects of (+)- and (-)-abscisic acid. J Exp Bot 49:191-198

Gibeaut, D.M., J. Hulett, G.R. Cramer, J.R. Seemann. 1997. Maximal biomass of Arabidopsis thaliana using a simple, low maintenance hydroponic method and favorable environmental conditions.* (modified from the original article in Plant Physiology (1997) 115:(317-319).

Cramer, G.R. and R.L Jones. 1996. Osmotic stress and abscisic acid reduce cytosolic calcium activities in roots of Arabidopsis thaliana. Plant Cell and Environment 19:1291-1298

Recent Book Chapters:

Lund, S.T. and G.R. Cramer. (2011). Functional Genomics: Proteomics and Metabolomics. In: Grapevine Genomics. Genetics, Genomics and Breeding of Grapes. Adam-Blondon, & Martinez-Zapater, eds. Series: Genetics, Genomics and Breeding of Crop Plants, C. Kole, Series Ed., Science Publishers, Inc., USA, (Chapter 12)

K.A. Schlauch, J. Grimplet, J.C. Cushman, and G.R. Cramer. (2010) Transcriptomics analysis methods: microarray data processing, analysis and visualization using the Affymetrix GeneChip® Vitis vinifera genome array. In: Methods and Results in Grapevine Research. Delrot, S.; Medrano, H.; Or, E.; Bavaresco, L.; Grando, S. (Eds.). Springer, Chap 22. pp. 317-334

J. Grimplet, G.R. Cramer, J. Dickerson, and A-F. Adam-Blondon. (2011) Bioinformatics Tools in Grapevine Genomics. In: Genetics, Genomics and Breeding of Grapes. Adam-Blondon, & Martinez-Zapater, eds. Series: Genetics, Genomics and Breeding of Crop Plants, C. Kole, Series Ed., Science Publishers, Inc., USA, (Chapter 13)

L.G. Deluc, G.R. Cramer and J.C. Cushman. 2007. Integrating functional genomics with abiotic stress responses in wine grape - Vitis vinifera. In: Advances in Molecular Breeding towards Salinity and Drought Tolerance, Eds. Eds: Matthew A. Jenks, Paul M. Hasegawa, and S. Mohan Jain. Springer, Dordrecht, The Netherlands. pp. 643-668.

Cramer, G.R., J. Evans, R. Ardelean, M. Keady, D. Quilici, D.A. Schooley. 2007. Impacts of regulated-deficit irrigation on the flavor components of grapes and wines. In: Macromolecules and Secondary Metabolites of Grapevine and Wine. Eds. P. Jeandet, C. Clément and A. Conreaux. Lavoisier, Paris, France, pp. 47-51.

Grimplet, J., L.G. Deluc, M. Wheatley, K.A. Schlauch, G.R. Cramer and J.C. Cushman. 2007. Tissue-specific mRNA expression profile in grape berry tissues. In: Macromolecules and Secondary Metabolites of Grapevine and Wine. Eds. P. Jeandet, C. Clément and A. Conreaux. Lavoisier, Paris, France, pp. 53-59.

Cramer, G.R., A. Ergul, D. Vincent, M.C. Bohlmann, J. Grimplet, E.A.R. Tattersall, R.L. Tillet, J. Evans, D. Quilici, D.A. Schooley, J.C. Cushman, K.A. Schlauch , and P. Mendes. 2005. Integrative functional genomics of abiotically-stressed grapevine: a system for discovery of gene and plant functions. Proceedings of the International Grape Genomics Symposium, St. Louis, Missouri, July 12-14, 2005, Eds., W. Qiu and L.G. Kovacs. pp 30 -37.

Cramer, G.R. 2002. Calcium-sodium interactions under salinity stress. (includes corrected Figure 2 which was published in error) In: Salinity. Environment-Plants-Molecules. Eds. A. Läuchli and U. Lüttge. Kluwer Academic Publishers

Munns, R., G.R. Cramer, and M.C. Ball. 1999. Interactions between rising CO2, soil salinity, and plant growth. In: Carbon Dioxide and Environmental Stress. Y. Luo, J.R. Seemann, eds., Academic Press, pp. 139-167

Cramer, G.R. 1997. Uptake and Role of Ions in Salt Tolerance. In: Strategies for Improving Salt Tolerance in Higher Plants. P.K. Jaiwal, R.P. Singh, A. Gulati, eds., Oxford and IBH Publishing Co. Pvt. Ltd., New Delhi, pp. 55-86